Artificial Selection Research Articles

Phenotypic characterization and analysis of genetic diversity between commercial crossbred and indigenous chickens from three different agro-ecological zones using DArT-Seq technology.

Indigenous and were used to study genetic diversity and population structure analyses. Polymorphism information content (PIC) values ranged from 0.0 to 0.5, with 21,285 SNP markers (35%) being in the lowest PIC value range (0 to 0.15) while 13,511 (commercial chickens have developed unique adaptations to their environments, which may include nutrition, pathogens, and thermal stress. Besides, environmental pressures and artificial selection have generated significant genome-wide divergence in chickens, as those selection pressures contribute a considerable evolutionary force to phenotypic and genotypic differentiation. Herein, we determined genomic diversity of indigenous chickens from semi-deciduous rainforest (SDR), coastal savannah (CS) and Guinea savannah (GS) agro-ecological zones (AEZs) in Ghana and commercial crossbreds (CC) reared at the Kwame Nkrumah University of Science and Technology (KNUST). We generated SNP markers from 82 chickens (62 indigenous chicken ecotypes and 26 commercial crossbred ecotype) using DArT-Seq technology. A total of 85,396 SNP markers were generated and after filtering the data, 58,353 markers 21%) were in the highest PIC value range (0.45 to 0.50). The CC were more genetically diverse than the indigenous birds, with the highest expected heterozygosity value of 0.220. Between the commercial crossbreds population and the indigenous ecotypes, pairwise FST values were estimated to be 0.105 between CS, 0.096 between SDF, and 0.133 between GS. Furthermore, PCA analysis showed that the CC, SDF and GS chickens clustered together and are genetically distant from the commercial crossbred. We herein show that chickens from the AEZs studied can be considered as one population. However, due the abundance of agro-byproducts in the SDR compared to the CS and GS, chickens from the SDR AEZ had better growth compared to their counterparts. It is suggested that the genetic diversity within the local ecotypes could form the basis for genetic improvement.

Study on the Short-Term Preservation of Gametes, Cross-Stimulation of Oocytes by Distant Sperm, and the Impact of Cold-Stimulated Fertilized Eggs on Eyes in the Celestial Goldfish

This study layed the groundwork for the creation of haploid and triploid celestial goldfish, presenting essential data derived from preliminary investigations. The research delved into three main areas: the short-term preservation of celestial goldfish gametes, the interaction between oocytes and foreign sperm, and the effects of temperature on fertilized eggs concerning hatching rates and late-stage ocular development. Initially, the study explored the optimal semen dilution ratio for celestial goldfish under microscopic examination. And the hybridization of the largemouth bass and celestial goldfish was investigated: largemouth bass sperm was crossbred with celestial goldfish eggs, and it was found that their sperm could not stimulate the development of celestial eye eggs. At last, celestial goldfish fertilized eggs were stimulated at 4 °C and −20 °C, respectively, to observe their impact on the hatching rate and later celestial eye rate. The results revealed no significant differences in hatching rate and celestial eye rate between the cold stimulus groups and the control group, but numerically, the 4 °C cold stimulation reduced the celestial eye rate of celestial goldfish fertilized eggs. The research provided fundamental data for artificial breeding and hybridization experiments in celestial goldfish.

Artificial selection footprints in indigenous and commercial chicken genomes

BackgroundAlthough many studies have been done to reveal artificial selection signatures in commercial and indigenous chickens, a limited number of genes have been linked to specific traits. To identify more trait-related artificial selection signatures and genes, we re-sequenced a total of 85 individuals of five indigenous chicken breeds with distinct traits from Yunnan Province, China.ResultsWe found 30 million non-redundant single nucleotide variants and small indels (< 50 bp) in the indigenous chickens, of which 10 million were not seen in 60 broilers, 56 layers and 35 red jungle fowls (RJFs) that we compared with. The variants in each breed are enriched in non-coding regions, while those in coding regions are largely tolerant, suggesting that most variants might affect cis-regulatory sequences. Based on 27 million bi-allelic single nucleotide polymorphisms identified in the chickens, we found numerous selective sweeps and affected genes in each indigenous chicken breed and substantially larger numbers of selective sweeps and affected genes in the broilers and layers than previously reported using a rigorous statistical model. Consistent with the locations of the variants, the vast majority (~ 98.3%) of the identified selective sweeps overlap known quantitative trait loci (QTLs). Meanwhile, 74.2% known QTLs overlap our identified selective sweeps. We confirmed most of previously identified trait-related genes and identified many novel ones, some of which might be related to body size and high egg production traits. Using RT-qPCR, we validated differential expression of eight genes (GHR, GHRHR, IGF2BP1, OVALX, ELF2, MGARP, NOCT, SLC25A15) that might be related to body size and high egg production traits in relevant tissues of relevant breeds.ConclusionWe identify 30 million single nucleotide variants and small indels in the five indigenous chicken breeds, 10 million of which are novel. We predict substantially more selective sweeps and affected genes than previously reported in both indigenous and commercial breeds. These variants and affected genes are good candidates for further experimental investigations of genotype-phenotype relationships and practical applications in chicken breeding programs.

Influence of temperature on embryonic development of Pontastacus leptodactylus freshwater crayfish, and characterization of growth and osmoregulation related genes

Narrow clawed crayfish, Pontastacus (Astacus) leptodactylus, represents an ecologically and economically valuable freshwater species. Despite the high importance of artificial breeding for conservation purpose and aquaculture potential, hatching protocols have not been developed so far in this species. Further, limited knowledge exists regarding the artificial egg incubation, the temperature effect on embryonic development, hatching synchronization and hatching rate. In the present study we investigated the temperature increase (from 17 oC to 22oC) effects in two different embryonic developmental stages of P. leptodactylus. Furthermore, two primer pairs for the Fibroblast Growth Factor Receptor 4 (FGFR4) gene cDNA amplification were successfully designed, characterising for the first time the FGFR4 gene in P. leptodactylus in relation to different developmental stages and temperatures. Apart from the FGFR4 gene, the Na+/K+-ATPase α-subunit expression was also explored. Both the FGFR4 and Na+/K+-ATPase α-subunit expression levels were higher in embryos closer to hatching. Egg incubation at 22oC for seven days led to significant increase of FGFR4 expression in embryos from earlier developmental stages. Nevertheless, temperature increase did not affect FGFR4 expression in eggs from latter developmental stages and Na+/K+-ATPase α-subunit expression in all developmental stages. Temperature increase represents therefore probably a promising strategy for accelerating hatching in freshwater crayfish particularly in early developmental stages. Specifically, our results indicate that FGFR4 expression increased in embryonic stages closer to hatching and that temperature influences significantly its expression in embryos from earlier developmental stages. Overall, these findings can provide a better understanding of artificial egg incubation of P. leptodactylus, and therefore can be employed for the effective management of this species, both for economic and biodiversity retention reasons.

Influence of honey bee (Apis mellifera) breeding on wing venation in Serbia and neighbouring countries.

In order to improve the productivity of honey bees (Apis mellifera), some of their traits are selected by breeding. On one hand, breeding is mainly based on the natural geographical variation of this species; on the other hand, mass production and distribution of artificially selected queens can significantly affect the natural geographic variation of honey bees. In this study, we have compared honey bee wings originating from breeding and non-breeding populations in Serbia. In the comparison, we have also used data from a large area of south-eastern Europe. The wings were measured using the 19 landmarks indicated on the wing images. The coordinates were analysed using the methodology of geometric morphometrics. We found that honey bees obtained from honey bee queen breeder differed in wing venation from surrounding populations, which are under natural selection. Therefore, we argue against including populations under artificial selection in the analysis of the natural geographical variation of honey bees. In our analysis of non-breeding samples, we found that in south-eastern Europe there is continuous variation in wing venation and no clear boundaries between A. m. carnica, A. m. cecropia, and A. m. macedonica.

Перспективы селекции вики озимой мохнатой (Vicia villosa Roth.) в Нечерноземной зоне России

In the Non-Chernozem zone, winter vetch is the only legume component of winter grain crops for forage purposes. In spring, summer and autumn, it can be used for feeding animals, harvesting hay, silage, and haylage. However, due to the relatively low winter hardiness, it has not yet been widely used in the feed production of the Non-Chernozem zone. The average winter hardiness of most vetch varieties in the Moscow region is 57–65%. In Federal Williams Research Center of Forage Production and Agroecology has developed a strategy for creating winter vetch varieties with high winter hardiness, resistance to abiotic stresses, high yields in green mass and seeds. The work was based on the thesis that the external environment can be used as an effective selective background, allowing genotypes with low adaptive potential to stress factors to be excluded from the population during the replanting process. As a source material, it is recommended to use old-town, naturally formed populations belonging to the Central Russian ecological and geographical group by the method of intraspecific hybridization in combination with targeted artificial and natural selection in phytocenosis and provocative backgrounds, varieties of winter vetch Lugovskaya 2 and Lugovskaya 3 were created. Winter hardiness of these varieties reaches 90–92%, dry matter yield 52–79 centner/ha, seeds 9.1–10.5 centner/ha. The values of the Serpukhovskaya standard variety were 64%, 37 and 4.1 centner/ha, respectively. High winter hardiness and increased competitiveness in the phytocenosis of new varieties is provided mainly by the formation of shoots from underground and lower aboveground nodes.

A Principal Components Analysis and Functional Annotation of Differentially Expressed Genes in Brain Regions of Gray Rats Selected for Tame or Aggressive Behavior

The process of domestication, despite its short duration as it compared with the time scale of the natural evolutionary process, has caused rapid and substantial changes in the phenotype of domestic animal species. Nonetheless, the genetic mechanisms underlying these changes remain poorly understood. The present study deals with an analysis of the transcriptomes from four brain regions of gray rats (Rattus norvegicus), serving as an experimental model object of domestication. We compared gene expression profiles in the hypothalamus, hippocampus, periaqueductal gray matter, and the midbrain tegmental region between tame domesticated and aggressive gray rats and revealed subdivisions of differentially expressed genes by principal components analysis that explain the main part of differentially gene expression variance. Functional analysis (in the DAVID (Database for Annotation, Visualization and Integrated Discovery) Bioinformatics Resources database) of the differentially expressed genes allowed us to identify and describe the key biological processes that can participate in the formation of the different behavioral patterns seen in the two groups of gray rats. Using the STRING- DB (search tool for recurring instances of neighboring genes) web service, we built a gene association network. The genes engaged in broad network interactions have been identified. Our study offers data on the genes whose expression levels change in response to artificial selection for behavior during animal domestication.

Dissecting Selective Signatures and Candidate Genes in Grandparent Lines Subject to High Selection Pressure for Broiler Production and in a Local Russian Chicken Breed of Ushanka.

Breeding improvements and quantitative trait genetics are essential to the advancement of broiler production. The impact of artificial selection on genomic architecture and the genetic markers sought remains a key area of research. Here, we used whole-genome resequencing data to analyze the genomic architecture, diversity, and selective sweeps in Cornish White (CRW) and Plymouth Rock White (PRW) transboundary breeds selected for meat production and, comparatively, in an aboriginal Russian breed of Ushanka (USH). Reads were aligned to the reference genome bGalGal1.mat.broiler.GRCg7b and filtered to remove PCR duplicates and low-quality reads using BWA-MEM2 and bcftools software; 12,563,892 SNPs were produced for subsequent analyses. Compared to CRW and PRW, USH had a lower diversity and a higher genetic distinctiveness. Selective sweep regions and corresponding candidate genes were examined based on ZFST, hapFLK, and ROH assessment procedures. Twenty-seven prioritized chicken genes and the functional projection from human homologs suggest their importance for selection signals in the studied breeds. These genes have a functional relationship with such trait categories as body weight, muscles, fat metabolism and deposition, reproduction, etc., mainly aligned with the QTLs in the sweep regions. This information is pivotal for further executing genomic selection to enhance phenotypic traits.

Comparative analysis on growth performance, survival and harvest traits between offspring from wild and mass-selected populations of Crassostrea nippona

Crassostrea nippona has recently been recognized as a preferred alternative to C. gigas in summer due to its firm flesh and high glycogen content. To promote industrial development, the mass selective breeding program was initiated to improve growth performance of C. nippona in 2014. Although a steady genetic gain of approximately 10% for growth traits was achieved in each of the first three generations of the selected strains, little is known about the cumulative genetic progress in desired traits contributed by the selective breeding in the genetic improvement program. In this study, the aquaculture performance of the selected population was comprehensively evaluated by comparing the production performance and reproductive traits of the progeny (WF1 and SF4) from the wild population and the third-generation selected line in commercial farming environments. The results showed that the diameters of eggs from both populations were at similar levels, but the fertilization and hatching rates of the progeny from the selected lines were significantly higher than those of the wild population (P < 0.05). At larval stages, the shell height and cumulative survival rate (CSR) of individuals from SF4 were consistently superior to that of WF1, especially on day 6 post-fertilization, in which CSR of the improved C. nippona was increased by 25.08% compared to that of wild oysters. Meanwhile, a significant 12.10% enhancement in the metamorphosis rate was observed in SF4 when compared with WF1. During the grow-out stage, SF4 displayed distinct advantages in growth performance and survival compared to the wild strain, with 23.19, 33.48, 34.18 and 79.11% improvement in shell height, body weight, CSR and final yield at harvest on day 800, respectively. Meanwhile, relative brood amount (RBA) associated with initial development of offspring was found to be significantly higher in SF4 compared with WF1 (P < 0.05). Remarkably, the gonadal development, sex ratios and biochemical composition of oysters from both populations were at similar levels at final harvest, implying that high-intensity artificial selection had no significant effect on reproductive characteristics and nutritional quality of C. nippona. The encouraging results in the present study suggest that the overall genetic progress contributed by genetic breeding is considerable in the fast-growing strain of C. nippona, and such gains are expected to continue to increase with further selective breeding.

Exploring the origin of a unique mutant allele in twin-tail goldfish using CRISPR/Cas9 mutants

Artificial selection has been widely applied to genetically fix rare phenotypic features in ornamental domesticated animals. For many of these animals, the mutated loci and alleles underlying rare phenotypes are known. However, few studies have explored whether these rare genetic mutations might have been fixed due to competition among related mutated alleles or if the fixation occurred due to contingent stochastic events. Here, we performed genetic crossing with twin-tail ornamental goldfish and CRISPR/Cas9-mutated goldfish to investigate why only a single mutated allele—chdS with a E127X stop codon (also called chdAE127X)—gives rise to the twin-tail phenotype in the modern domesticated goldfish population. Two closely related chdS mutants were generated with CRISPR/Cas9 and compared with the E127X allele in F2 and F3 generations. Both of the CRISPR/Cas9-generated alleles were equivalent to the E127X allele in terms of penetrance/expressivity of the twin-tail phenotype and viability of carriers. These findings indicate that multiple truncating mutations could have produced viable twin-tail goldfish. Therefore, the absence of polymorphic alleles for the twin-tail phenotype in modern goldfish likely stems from stochastic elimination or a lack of competing alleles in the common ancestor. Our study is the first experimental comparison of a singular domestication-derived allele with CRISPR/Cas9-generated alleles to understand how genetic fixation of a unique genotype and phenotype may have occurred. Thus, our work may provide a conceptual framework for future investigations of rare evolutionary events in domesticated animals.

Functional differentiation and genetic diversity of rice cation exchanger (CAX) genes and their potential use in rice improvement

Cation exchanger (CAX) genes play an important role in plant growth/development and response to biotic and abiotic stresses. Here, we tried to obtain important information on the functionalities and phenotypic effects of CAX gene family by systematic analyses of their expression patterns, genetic diversity (gene CDS haplotypes, structural variations, gene presence/absence variations) in 3010 rice genomes and nine parents of 496 Huanghuazhan introgression lines, the frequency shifts of the predominant gcHaps at these loci to artificial selection during modern breeding, and their association with tolerances to several abiotic stresses. Significant amounts of variation also exist in the cis-regulatory elements (CREs) of the OsCAX gene promoters in 50 high-quality rice genomes. The functional differentiation of OsCAX gene family were reflected primarily by their tissue and development specific expression patterns and in varied responses to different treatments, by unique sets of CREs in their promoters and their associations with specific agronomic traits/abiotic stress tolerances. Our results indicated that OsCAX1a and OsCAX2 as general signal transporters were in many processes of rice growth/development and responses to diverse environments, but they might be of less value in rice improvement. OsCAX1b, OsCAX1c, OsCAX3 and OsCAX4 was expected to be of potential value in rice improvement because of their associations with specific traits, responsiveness to specific abiotic stresses or phytohormones, and relatively high gcHap and CRE diversity. Our strategy was demonstrated to be highly efficient to obtain important genetic information on genes/alleles of specific gene family and can be used to systematically characterize the other rice gene families.

Artificial structure selection by economically important reef fishes at North Carolina artificial reefs

Artificial reefs can play an important role in marine fisheries management by supplementing or enhancing natural habitats. Despite their increased use in recent years, the choice of structures used at artificial reefs remains largely haphazard due to the lack of information on reef structure performance. Few studies have examined the use of different artificial reef structures by individual fish. From 2021-2022, we acoustically tagged 72 black sea bass (Centropristis striata), 34 gag (Mycteroperca mircrolepis), 27 greater amberjack (Seriola dumerili), nine almaco jack (S. rivoliana), and eight red snapper (Lutjanus campechanus) on four artificial reef complexes near Cape Lookout, North Carolina, U.S. Available artificial reef structures consisted of materials of various sizes and heights made of concrete and metal. We tracked tagged fish using a fine-scale positioning system for ~100 days. Black sea bass exhibited high site fidelity to the artificial structure where we caught them, rarely moving away from that structure. The limited movement resulted in low transition probabilities; we conclude that black sea bass do not select for particular artificial structures. Gag and red snapper moved greater distances away from artificial structures and routinely moved between them. Greater amberjack and almaco jack moved the most within the complexes displaying circling behavior around individual structures and were the only species that regularly moved off the artificial reef complexes. Greater amberjack movements away from artificial sites were most commonly directed to surrounding shipwrecks. Whereas gag, red snapper, almaco jack, and greater amberjack used all available structures, they consistently selected for high relief structures, such as vessels, more than other structures. These results will be useful to managers charged with decisions on what types of structures to place at artificial reef complexes to supplement or enhance habitat for economically important fishes.

Transcriptome Profiling Unveils Key Genes Regulating the Growth and Development of Yangzhou Goose Knob.

Goose is one of the most economically valuable poultry species and has a distinct appearance due to its possession of a knob. A knob is a hallmark of sexual maturity in goose (Anser cygnoides) and plays crucial roles in artificial selection, health status, social signaling, and body temperature regulation. However, the genetic mechanisms influencing the growth and development of goose knobs remain completely unclear. In this study, histomorphological and transcriptomic analyses of goose knobs in D70, D120, and D300 Yangzhou geese revealed differential changes in tissue morphology during the growth and development of goose knobs and the key core genes that regulate goose knob traits. Observation of tissue sections revealed that as age increased, the thickness of the knob epidermis, cuticle, and spinous cells gradually decreased. Additionally, fat cells in the dermis and subcutaneous connective tissue transitioned from loose to dense. Transcriptome sequencing results, analyzed through differential expression, Weighted Gene Co-expression Network Analysis (WGCNA), and pattern expression analysis methods, showed D70-vs.-D120 (up-regulated: 192; down-regulated: 423), D70-vs.-D300 (up-regulated: 1394; down-regulated: 1893), and D120-vs.-D300 (up-regulated: 1017; down-regulated: 1324). A total of 6243 differentially expressed genes (DEGs) were identified, indicating varied expression levels across the three groups in the knob tissues of D70, D120, and D300 Yangzhou geese. These DEGs are significantly enriched in biological processes (BP) such as skin morphogenesis, the regulation of keratinocyte proliferation, and epidermal cell differentiation. Furthermore, they demonstrate enrichment in pathways related to goose knob development, including ECM-receptor interaction, NF-kappa B, and PPAR signaling. Through pattern expression analysis, three gene expression clusters related to goose knob traits were identified. The joint analysis of candidate genes associated with goose knob development and WGCNA led to the identification of key core genes influencing goose knob development. These core genes comprise WNT4, WNT10A, TCF7L2, GATA3, ADRA2A, CASP3, SFN, KDF1, ERRFI1, SPRY1, and EVPL. In summary, this study provides a reference for understanding the molecular mechanisms of goose knob growth and development and provides effective ideas and methods for the genetic improvement of goose knob traits.

Artificial Lift Selection Methods in Conventional and Unconventional Wells: A Summary and Review from Old Techniques to Machine Learning Applications

Artificial lift (AL) selection is an important process in enhancing oil and gas production from reservoirs. This article explores the old and current states of AL selection in conventional and unconventional wells, identifying the challenges faced in the process. The role of various factors such as production and reservoir data and economic and environmental considerations is highlighted. The article also examines the use of machine learning (ML) techniques in the AL selection process, emphasising their potential to increase the accuracy of selection and reduce data analysis time. The findings of this article provide valuable insights for researchers and practitioners in the oil and gas industry, as well as for those interested in the development of AL selection methods.

Artificial Selection Program for the Improvement of Genetics in Bovine Animals

The present work focuses on the study of animal genetic improvement in bovines of the city of Huánuco with genetic algorithms which will help to improve in each new generation of bovine calves both the physical characteristics and adaptation to new environments, also in improving meat and milk.&#x0D; Evaluate productive records of animals with multiple crossings to determine differences at the productive level. The data that belong to bovines with multiple racial component belonging to the Huánuco farms dedicated to the production of meat and milk. The high dispersion of the offspring values and the high genetic correlation between the evaluated traits allowed the identification of animals with high genetic merit, meriting their potential use as parents of the next generation.&#x0D; All of this will serve as a reference for new care processes in raising and feeding bovines

Whole genome resequencing reveals genomic regions related to red plumage in ducks

Plumage color is a characteristic trait of ducks that originates as a result of natural and artificial selection. As a conspicuous phenotypic feature, it is a breed characteristic. Previous studies have identified some genes associated with the formation of black and white plumage in ducks. However, studies on the genetic basis underlying the red plumage phenotype in ducks are limited. Here, genome-wide association analysis (GWAS) and selection signal detection (Fst, θπ ratio, and cross-population composite likelihood ratio [XP-CLR]) were conducted to identify candidate regions and genes underlying duck plumage color phenotype. Selection signal detection revealed 29 overlapping genes (including ENPP1 and ULK1) significantly associated with red plumage color in Ji'an Red ducks. ENSAPLG00000012679, ESRRG, and SPATA5 were identified as candidate genes associated with red plumage using GWAS. Selection signal detection revealed that 19 overlapping genes (including GMDS, PDIA6, and ODC1) significantly correlated with light brown plumage in Brown Tsaiya ducks. GWAS to narrow down the significant regions further revealed nine candidate genes (AKT1, ATP6V1C2, GMDS, LRP4, MAML3, PDIA6, PLD5, TMEM63B, and TSPAN8). Notably, in Brown Tsaiya ducks, GMDS, ODC1, and PDIA6 exhibit significantly differentiated allele frequencies among other feather-colored ducks, while in Ji'an Red ducks, ENSAPLG00000012679 has different allele frequency distributions compared with that in other feather-colored ducks. This study offers new insights into the variation and selection of the red plumage phenotype using GWAS and selective signals.

The effect of worker clothing color on stress in laying hens

Abstract. The environment in which animals are kept must provide suitable conditions for their species. This includes ensuring that animals are healthy, well-fed, safe, able to exhibit species-specific behaviors, not experiencing fear or pain, and not under chronic or acute stress. Poultry welfare is achieved when birds are raised in environments that meet their physiological and ethological needs. Fear can significantly impact animal welfare. Chickens have been significantly altered by human artificial selection. Despite this, they exhibit reactivity towards humans and tend to avoid them. Poultry animals reared in environmentally controlled poultry houses and bred for superior productivity are more sensitive to fear factors and have lost their adaptability to a great extent. This study aimed to determine the effect of personnel clothing color on stress and fear in chickens in layer hen coops. The experiment involved 32-week-old laying hens of three different genotypes. A worker in the henhouse wore six respective different colors of workwear (dark blue, green, red, yellow, black, and white), and sound measurements were taken during this time. The results showed that the color of the worker's clothing influenced the sound intensity of the chickens (P&lt;0.05). White clothing elicited the least reaction, whereas black and dark blue elicited the most. The other three colors showed similar reactions. In conclusion, workers in layer hen coops wearing dark clothing, such as dark blue and black, can induce stress and noise in the animals. Additionally, chickens showed similar reactions to green, red, and yellow colors, with white being the color around which they felt the most secure.

Whole-genome resequencing of Hu sheep identifies candidate genes associated with agronomic traits

The phenotypic diversity resulting from artificial or natural selection of sheep has made a significant contribution to human civilization. Hu sheep are a local sheep breed unique to China with high reproductive rates and rapid growth. Genome selection signatures have been widely used to investigate the genetic mechanisms underlying phenotypic variation in livestock. Here, we conduct whole-genome sequencing of 207 Hu sheep and compare them with the wild ancestors of domestic sheep (Asiatic mouflon) to investigate the genetic characteristics and selection signatures of Hu sheep. Based on six signatures of selection approaches, we detect genomic regions containing genes related to reproduction (BMPR1B, BMP2, PGFS, CYP19, CAMK4, GGT5, and GNAQ), vision (ALDH1A2, SAG, and PDE6B), nervous system (NAV1), and immune response (GPR35, SH2B2, PIK3R3, and HRAS). Association analysis with a population of 1299 Hu sheep reveal those missense mutations in the GPR35 (GPR35 g.952651 A>G; GPR35 g.952496 C>T) and NAV1 (NAV1 g.84216190 C>T; NAV1 g.84227412 G>A) genes are significantly associated (P < 0.05) with immune and growth traits in Hu sheep, respectively. This research offers unique insights into the selection characteristics of Hu sheep and facilitates further genetic improvement and molecular investigations.

The Dual Role of Culture in Evolutionary Play: Anthropogenic Expansion Vs Destruction of Biodiversity

A large number of Green discourse blames the human species for the current ecological crisis. However, this description of humanity as the ecocidal culprit serves to conceal the role of humans, in both past and contemporary pre-industrial societies, as custodians of biodiversity. Indigenous societies are known to have conserved their natural resource base for posterity, by instituting cultural norms and institutions against exhaustive resource use. In addition, pre-industrial societies also increased biodiversity on taxic and genetic levels, by domestication of many wild biota, and on the ecosystem level with agroforestry. While Darwin gave much importance to the process of domestication of plants and animals by means of artificial selection, modern science and agriculture curricula tend to neglect this aspect of the history of human civilization. The novel taxa, created in the process of domestication, are characterised by many morphological and behavioural traits never found in the wild progenitor species. Further selection of favourable traits of the new species created an abundance of distinctive crop landraces and animal breeds. The increment in diversity at the ecosystem, taxic and genetic levels, by the process of domestication and in ancient agroforestry systems, began to reverse with industrial development over the past two centuries. Indeed, industrial development has been the chief driver of the continuing process of biodiversity erosion and habitat loss worldwide. Industrial agricultural systems, signposted by the Green Revolution (GR), has severely truncated the on-farm crop species and genetic diversity, which characterised traditional multi-crop farming and agroforestry systems in native agrarian cultures. Over the past six decades, the continual replacement of hundreds of landraces with a handful of GR cultivars, combined with the institutional apathy toward in situ landrace conservation efforts, has led to the disappearance of the importance of genetic purity of landraces from breeding programs and heirloom crop conservation discourse. Most of the modern farmers, predominantly dependent on the industrial supply of crop seeds, have forgotten the methods of genetic purity maintenance, resulting in the rapid loss of the hundreds of crop landraces with distinctive properties, which were selected centuries ago for diverse agronomic, gustatory, and aesthetic qualities. A recognition of the value of the custodian role of ecosystem people in creating and conserving biodiversity, vis-a-vis the current industrial decimation of biodiversity on all levels, will likely promote biodiversity conservation ethos in modern societies, and the value of genetic purity of the extant crop landraces.

Non-Targeted Metabolomics Reveals the Metabolic Alterations in Response to Artificial Selective Breeding in the Fast-Growing Strains of Pacific Oyster

Non-Targeted Metabolomics Reveals the Metabolic Alterations in Response to Artificial Selective Breeding in the Fast-Growing Strains of Pacific Oyster